PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00018151-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 218aa    MW: 24659.2 Da    PI: 6.3011
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00018151-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.5e-123984555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        +  +ErrRR+++ +++ +Lr l+P       + ++Ka+i e A+ YI++Lq
  WALNUT_00018151-RA 39 NLHAERRRRQKLSDRLLKLRALVPRI-----TNMNKATIIEDAITYIQELQ 84
                        5579*********************6.....68*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.0E-1533102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-1633101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.8053483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.04E-123688No hitNo description
PfamPF000103.9E-93884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-114089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEHLDTALDE SCIIEEGSTS TGRMGRRSYD DTKEHKSKNL HAERRRRQKL SDRLLKLRAL  60
VPRITNMNKA TIIEDAITYI QELQKNVKIL QEQLCELEVE ASSEVGEINP ASKVKVEAAE  120
EMKKSGIQVE VEVTQIDRDK LWVKVIFEKK RGGFTTLMEA MSAFGFEFIN TNVTTSKGAM  180
LVSSCVKGIY GEKLAVQQTR ELLLQIINGV DQSNSEYC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225011.12e-89PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1
SwissprotO819001e-46DYT1_ARATH; Transcription factor DYT1
TrEMBLA5BG381e-70A5BG38_VITVI; Putative uncharacterized protein
STRINGPOPTR_0004s02920.12e-62(Populus trichocarpa)
STRINGGLYMA15G06960.22e-62(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.13e-41bHLH family protein